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Getting Started

  • Installation
  • Quick Start

Documentation

  • Getting starting with transformers
  • Logging
  • Multi-gpus
  • MSA

Tutorial

  • Loglikelihood
  • Embeddings
  • Finetuning
  • Mutation score

Api reference

  • Bio-transformers method

Contributing

  • Contributing
  • API Reference
    • biotransformers
      • biotransformers.lightning_utils
        • biotransformers.lightning_utils.data
        • biotransformers.lightning_utils.models
        • biotransformers.lightning_utils.optimizer
      • biotransformers.tests
        • biotransformers.tests.conftest
        • biotransformers.tests.test_accuracy
        • biotransformers.tests.test_embeddings
        • biotransformers.tests.test_logits
        • biotransformers.tests.test_loglikelihoods
        • biotransformers.tests.test_mutation_score
      • biotransformers.utils
        • biotransformers.utils.compute_utils
        • biotransformers.utils.constant
        • biotransformers.utils.deprecated
        • biotransformers.utils.logger
        • biotransformers.utils.msa_utils
        • biotransformers.utils.tqdm_utils
        • biotransformers.utils.utils
      • biotransformers.wrappers
        • biotransformers.wrappers.esm_wrappers
        • biotransformers.wrappers.language_model
        • biotransformers.wrappers.rostlab_wrapper
        • biotransformers.wrappers.transformers_wrappers
      • biotransformers.bio_transformers
      • biotransformers.version
  • Repository
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  • .rst

biotransformers.utils

Contents

  • Submodules

biotransformers.utils#

Submodules#

  • biotransformers.utils.compute_utils
  • biotransformers.utils.constant
  • biotransformers.utils.deprecated
  • biotransformers.utils.logger
  • biotransformers.utils.msa_utils
  • biotransformers.utils.tqdm_utils
  • biotransformers.utils.utils
Contents
  • Submodules

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