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biotransformers
biotransformers.lightning_utils
biotransformers.lightning_utils.data
biotransformers.lightning_utils.models
biotransformers.lightning_utils.optimizer
biotransformers.tests
biotransformers.tests.conftest
biotransformers.tests.test_accuracy
biotransformers.tests.test_embeddings
biotransformers.tests.test_logits
biotransformers.tests.test_loglikelihoods
biotransformers.tests.test_mutation_score
biotransformers.utils
biotransformers.utils.compute_utils
biotransformers.utils.constant
biotransformers.utils.deprecated
biotransformers.utils.logger
biotransformers.utils.msa_utils
biotransformers.utils.tqdm_utils
biotransformers.utils.utils
biotransformers.wrappers
biotransformers.wrappers.esm_wrappers
biotransformers.wrappers.language_model
biotransformers.wrappers.rostlab_wrapper
biotransformers.wrappers.transformers_wrappers
biotransformers.bio_transformers
biotransformers.version
If you want to know more about the transformers architecture, have a look at:
The illustrated transformers
The annotated transformers
If you want to understand the secret of how to train deep-learning model on protein, the two best repo are:
ProtTrans repo
ESM repo
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